| Annotation |
|---|
| Description | jgi|Araly1|490399|fgenesh2_kg.6__3533__AT4G01800.1 |
| Sequence |
ATGGTGTCTC CACTCTGCGA CTCTCAGTTA CTTAACCACC GACCCTCGAT CTCACCCACA GCTTCCCAGT TCGTGATCGC TGATGGAATC TTCCTCCGGC AGAATCGTCT TTTGAGCTCT TCGTCGTTTT GGGGCACCAA ATTCGGAAAC ACCGTGAAGT TGGGAGTATC CGGATGTAGT AGCTGCTCTC GGAGGAGGAC CACGAGTGTG AATGCTTCAT TAGGTGGTCT TCTCAGCGGG ATTTTCAAGG GTTCTGATAA CGGAGAGTCG ACGAGGCAAC AGTACGCATC AATCGTTGCC TCCGTCAATC GCTTGGAGAC TGAGATTTCG GCTCTTTCGG ATTCAGAGTT GCGAGGAAGA ACTGATGCGT TGAAGCAACG GGCTCAGAAA GGAGAATCCA TGGATTCACT TTTACCTGAA GCATTTGCTG TTGTGAGAGA AGCTTCCAAG AGAGTTCTTG GACTAAGACC TTTTGATGTG CAATTAATTG GTGGTATGGT TCTTCATAAA GGAGAAATAG CTGAAATGAG AACTGGTGAA GGGAAAACGC TTGTTGCTAT TTTACCTGCT TATTTGAATG CATTAAGTGG GAAAGGTGTT CATGTGGTTA CAGTCAATGA TTATCTTGCT CGAAGAGATT GTGAATGGGT TGGTCAAGTT CCTCGGTTCC TTGGATTGAA GGTTGGTCTA ATCCAACAGA ATATGACACC TGAACAAAGA AAGGAAAATT ATTTATGCGA CATCACTTAT GTCACCAACA GTGAGCTTGG ATTCGATTAT CTGAGAGACA ATCTTGCCAC GAGTGTGGAG GAGCTCGTCT TGAGGGATTT CAATTATTGT GTAATTGATG AAGTTGATTC CATACTTATT GATGAAGCAA GGACTCCTCT CATTATCTCT GGGCCTGCAG AGAAACCTAG TGACCAATAT TACAAAGCTG CAAAGATTGC TTCAGCCTTT GAGCGGGATA TACATTACAC TGTTGATGAA AAGCAGAAGA CTGTTTTACT AACAGAACAG GGTTATGAGG ATGCAGAAGA AATCCTGGAC GTGAAAGATT TGTATGATCC CCGTGAACAA TGGGCATCAT ATGTTCTTAA TGCCATTAAG GCAAAAGAAC TTTTTCTCAG AGATGTTAAC TATATCATCC GGGCAAAGGA GGTTCTTATC GTGGATGAGT TTACTGGCCG TGTAATGCAG GGAAGACGTT GGAGTGACGG ACTACATCAA GCAGTTGAAG CAAAAGAAGG CTTGCCTATT CAGAATGAAT CCATTACTTT GGCATCAATT AGTTATCAAA ATTTCTTTTT GCAGTTTCCG AAACTTTGCG GGATGACTGG TACTGCATCC ACCGAGAGTG CAGAATTTGA GAGCATATAC AAGCTCAAAG TTACAATTGT ACCCACAAAT AAGCCCATGA TAAGAAAGGA TGAGTCGGAT GTAGTTTTCA AGGCAGTCAA TGGTAAATGG CGGGCAGTAG TAGTGGAGAT CTCTAGAATG CACAAGACAG GTAGGGCTGT GCTAGTTGGT ACAACCAGTG TCGAGCAGAG TGATGAACTA TCGCAACTAT TGCGGGAAGC TGGAATACCT CATGAGGTCC TCAATGCCAA ACCAGAAAAT GTGGAGAGGG AAGCTGAAAT TGTAGCACAA AGTGGCCGTT TAGGAGCAGT AACAATTGCC ACAAATATGG CAGGGCGTGG GACAGACATA ATTCTTGGTG GAAACGCAGA GTTTATGGCA CGTTTGAAGC TCCGTGAGAT ACTTATGCCC AGAGTGGTAA AGCCTACTGA TGGTGTTTTC GTATCTGTGA AGAAGGCCCC TCCCAAGAGA ACATGGAAGG TGAACGAGAA GTTATTTCCA TGCAAATTGT CAAATGAGAA AGTAAAGCTA GCTGAAGAAG CTGTACAATC AGCTGTAGAG GCTTGGGGCC AGAAAGCTTT AACTGAGCTT GAAGCAGAGG AACGTCTATC TTATTCTTGT GAAAAGGGTC CTGTCCAAGA TGAAGTTATA GCTAAACTGA GGACCGGATT TCTGGCGATA GCGAAAGAAT ATAAGGGCTA CACTGATGAA GAAAGGAAGA AGGTTGTGGA AGCTGGTGGA CTTCACGTTG TGGGGACAGA GCGGCATGAA TCACGCCGAA TAGACAATCA GTTGCGTGGG CGAAGTGGTC GGCAGGGGGA TCCTGGAAGT TCCCGGTTCT TCCTTAGTCT TGAAGATAAC ATATTCCGCA TTTTTGGTGG AGATCGGATT CAGGGTATGA TGAGAGCATT CAGGGTGGAA GACTTACCGA TCGAATCCAA GATGCTTACT AAAGCTCTAG ATGAAGCTCA GAGAAAAGTT GAGAATTACT TCTTTGACAT CAGAAAGCAA CTATTCGAAT TTGACGAGGT TCTCAATAGC CAAAGAGATC GTGTTTACAC AGAGAGAAGG CGTGCTCTTG TGTCAGACAG CCTCGAGCCT CTGATTATCG AGTATGCTGA ATTGACAATG GATGACATTC TAGAGGCAAA TATTGGCCCA GAAACTCCAA AAGAAAGCTG GGATTTTGAA AAGCTCATTG CGAAAGTTCA GCAGTACTGT TACCTGTTGA ACGATCTCAC TCCAGATTTG CTAAAAAGCC AAGGATCAAG TTACGAAGGG TTGCAAGATT ATCTACGTGC CCGTGGCCGC GAGGCATACT TACAGAAAAG AGAAATTGTG GAGAAACAAT CACCAGGGCT AATGAAAGAT GCTGAACGAT TCTTAATCTT GAGCAATATT GACCGGTTAT GGAAAGAACA CCTTCAAGCG CTCAAGTTTG TGCAACAAGC TGTGGGGCTT AGAGGATATG CGCAACGCGA TCCACTCATC GAGTATAAGC TTGAAGGATA CAATCTATTT CTGGAAATGA TGGCTCAAAT ACGAAGAAAT GTTATATACT CCATATATCA GTTTCAACCA GTGCGGGTAA AGAAGGACGA TGATAAGAAA TCTCAGAACG GGAAACCGAG CAAACAAATG GATAATGTTA GTGAGAAGCC TAAACAAGTC GGTGTCACAG ATGAGCCATC CTCAATTGCC AGCGCCTAAG AGCAGTAAAC GGTAAAATCT TTTTGGGATA CTAGAGCGGG AATTCGTATC GCTAAAATTG TTGTCAATGT CATTTATCTG TATATATTAC TACACTGAGA AAGGATCACA TCAAAACAAG ATCAAAGAAA ACTCCCTTCT CTTACAGCAT C |
| Length | 3221 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 22615100.. 22620511 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G01800.2 |
| Description | Albino or Glassy Yellow 1 |
| TAIR curator summary | Encodes the ATPase subunit of the chloroplast Sec translocation machinery which plays an essential role in chloroplast biogenesis and the regulation of photosynthesis, the absence of which triggers a retrograde signal, eventually leading to a reprogramming of chloroplast and mitochondrial gene expression. |
| Alias | [AGY1][AtcpSecA][SECA1][Albino or Glassy Yellow 1][Arabidopsis thaliana chloroplast SecA] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 6.78233 |
Ahg495389 | FTSH protease 11 |
| 7.07107 |
Ahg942027 | Protein of unknown function (DUF3411) |
| 10.2956 |
Ahg489169 | photosystem II stability/assembly factor, chloroplast (HCF136) |
| 10.3923 |
Ahg473985 | Protein of unknown function (DUF760) |
| 11.3137 |
Ahg475077 | Translation elongation factor EFG/EF2 protein |
| 17.5499 |
Ahg494796 | Insulinase (Peptidase family M16) family protein |
| 17.8885 |
Ahg891001 | plastid transcriptionally active 5 |
| 18.1108 |
Ahg319286 | threonyl-tRNA synthetase, putative / threonine--tRNA ligase, putative |
| 18.7617 |
Ahg940830 | elongation factor family protein |
| 20.9284 |
Ahg474208 | polymerase gamma 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|