| Annotation |
|---|
| Description | jgi|Araly1|493949|fgenesh2_kg.7__3382__AT5G40390.1 |
| Sequence |
TTACATGTCG ACCAATAAAT CTATAAGTAT ATAATGACAT TTCCAAACTT TCTTTCAATC CATAATCTTA TCAAATAATC AAATTTGGGA AAGTTTTTAA GATTCATAAT CTCTATAAAT TACTCTCTAC CATCTTAACC TAAAAAACAT CTTCAATCTT TTATCGGCAA AATGGCTCCA CCGAGTTTAA CCAAGTCCGA TTCCGGTACC AACGGCGTTT ACTTTACCGG AAAACCTCTT TTCCGGTTAG AAGATTCCAA TCTCTTAGCA AATGGTCAAG TCGTCTTAAC CGATGTTCCG GTTAACGTTA CTCTCACCAC TTCACCTTAC CTAACCGACA AAGACGGCCT ACCAATCGAC GTCTCCGCCG GTTCATTCAT CGGGTTTAAC CTCGACGGAG AGCCCAAAAG CCACCACGTG GCATCCATCG GAAAACTCAA GAACATTCGT TTCATGAGCA TATTCCGTTT CAAGGTTTGG TGGACCACTC ATTGGGTCGG ATCAAACGGA CGTGACATCG AGAACGAGAC CCAAATCATC ATTCTTGATC AATCCGCGTC GGATTCTGGA TCCGGATCCG GGTCGGGTCG TCCTTATGTT CTCCTGTTAC CTCTTCTTGA AGGCTCCTTC CGTTCATCTT TCCAATCTGG AGAAGACGAT GATGTGGCGG TCTGTGTCGA ATCCGGGTCA ACCCAAGTAA CCGGGTCGGA GTTTCGTCAG ATTGTGTATG TCCACGCCGG AGATGACCCG TTTAAGCTCG TGAAGGACGC CATGAAAGTG ATTAGGGTTC ATATGAATAC GTTCAAGCTT CTTGAAGAGA AATCGCCGCC GGGAATCGTC GATAAGTTCG GGTGGTGCAC TTGGGACGCT TTTTACTTGA CGGTGAATCC TGACGGAGTT CATAAAGGTG TTAAGTGTCT CGTCGACGGT GGTTGTCCTC CGGGATTGGT TCTTATCGAC GACGGTTGGC AATCGATTGG ACATGATTCC GATGGTATTG ATGTCGAAGG GATGAATATT ACCGTCGCCG GTGAACAAAT GCCTTGCAGG CTTCTGAAGT TTGAAGAGAA CCACAAATTC AAAGACTACG TGTCTCCAAA AGATCAAAAC GACGTCGGAA TGAAAGCTTT CGTCAGAGAT CTGAAAGATG AATTCTCCAC CGTTGATTAC ATCTACGTCT GGCACGCACT TTGCGGTTAC TGGGGAGGTC TCCGTCCCGA AGCTCCGACT CTTCCGCCGT CGACTATTAT CCGGCCAGAG CTCTCTCCAG GACTTAAACT CACAATGGAA GATCTCGCCG TCGATAAGAT CATTGAGACC GGAATCGGAC TTGTCTCGCC GGACTTGGCG AAAGAGGTCT ACGAAGGTCT TCACTCTCAT CTTCAAAACG CCGGTATTGA CGGCGTTAAA GTTGATGTCA TCCACATATT GGAGATGTTG TGCGAGAAAT ATGGCGGGAG AGTTGACTTG GCCAAAGCTT ACTTCAAGGC GCTAACGTCG TCAGTGAATA AGCATTTTAA TGGTAACGGC GTTATCGCCA GCATGGAGCA CTGTAATGAC TTCATGTTCC TTGGAACTGA AGCCATCGCT CTTGGTCGTG TCGGTGATGA CTTTTGGTGC ACGGATCCAT CAGGCGATCC AAACGGTACG TTTTGGCTAC AAGGATGTCA CATGGTCCAC TGTGCATACA ACAGTCTCTG GATGGGAAAT TTCATTCAGC CTGATTGGGA CATGTTTCAG TCCACTCATC CTTGTGCTGA GTTCCATGCT GCTTCTCGAG CCATATCGGG TGGGCCGATT TACATCAGTG ATTGTGTGGG CAAGCATGAT TTCGATCTCT TGAAGCGTCT AGTTTTGCCC AACGGTTCGA TTTTGAGGTG TGAGTACTAT GCTCTCCCAA CTCGTGACCG CCTATTTGAT GATCCTCTTC ATGATGGCAA AACCATGCTC AAGATTTGGA ACTTGAACAA GTACACTGGA GTTATTGGAG CATTCAACTG TCAAGGAGGA GGATGGTGCA GAGAAACCAG ACGCAACCAA TGTTTCTCTG AATGCGTTAA CACGCTAACT GCCACAACAA GCCCTAAAGA CGTTGAATGG AACAGTGGAA GCAGCCCAAT CTCCATTGCA AACGTTGAAG AGTTTGCTTT GTTCTTGTCT CAATCCAAGA AGCTTGTGTT GTCTGGACTA AATGATGATC TCGAGCTCAC TTTAGAGCCT TTCAAGTTTG AGCTGATCAC TGTCTCTCCT GTTGTGACCA TTGAGGGTAA TTCAGTCCGG TTTGCTCCGA TTGGACTGGT TAACATGCTA AACACAAGCG GTGCGATCCG GTCTCTGGTG TATAATGATG AAACTGTTCA GATCGGAGTT TTTGGTGCGG GAGAGTTTAG GGTTTATGCA TCGAAAAAAC CTGAGAGCTG CTTAATTGAT GGTGAAGTTG TTGAGTTTGG TTATGAAGAC TCAATGGTGA TGGTGCAAGT GCCTTGGTCT GGTCCAGAGG GTTTGACTTC TATTGAGTAT TTGTTTTAGA GAATTTGAAG GTCCTTATTT GTTTCCTTCT AAACTCCGTA CCGTTCGTTG AGTTTTCCAA AGAACTCCGA GCCGTTTTTT TTATATGGTT TTCGAGAGTG AACAATTTAT GTTGGGTTTT TTTTTGTCAA ACAATTTATG TTGGCTTTTT TATTTGAGGA TTTTTTTTAT CAGTGGTAGA ATCTTTTTTC ATAATTTGTG ACAGAATTGT TATCAAC |
| Length | 2747 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 20938046.. 20941799 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G40390.1 |
| Description | Raffinose synthase family protein |
| TAIR curator summary | Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged. |
| Alias | [RS5][SIP1][raffinose synthase 5][seed imbibition 1-like] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.74166 |
Ahg485985 | Regulator of chromosome condensation (RCC1) family protein |
| 4.89898 |
Ahg488447 | stress-responsive protein (KIN2) / stress-induced protein (KIN2) / cold-responsive protein (COR6.6) / cold-regulated protein (COR6.6) |
| 5.74456 |
Ahg491430 | tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) |
| 6.7082 |
Ahg494585 | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| 8.06226 |
Ahg472273 | Dehydrin family protein |
| 8.48528 |
Ahg483012 | delta1-pyrroline-5-carboxylate synthase 1 |
| 9.48683 |
Ahg949787 | low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
| 11.4891 |
Ahg485777 | Regulator of chromosome condensation (RCC1) family protein |
| 11.6619 |
Ahg495528 | B-box type zinc finger family protein |
| 12.2474 |
Ahg481185 | Late embryogenesis abundant protein, group 6 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|