| Annotation |
|---|
| Description | jgi|Araly1|494803|fgenesh2_kg.8__619__AT5G42270.1 |
| Sequence |
GTAGACGAAC CTCAAGCAAT CACTCAAACT CATGACTTCT CTTTAATCCT CCTCCAAAAA ATCTCAATTT GCAGAGAAAC CTCCTTCAAA TTCAATTCAA AGATCCTTCC TTTTTCACCA CTTTCTTCTT CAAAATCTAA TTTTGATTCT TCAGAGAGCT TCAATGGCGA CCACATCTTC AAACCCATTA CTACTTTCTT CAAATTTCCT CGGTTCTCAA ATCATAATCT CAGCTCCAAC ACCAAAAACC ACCACAAAGT CTCTTCCTTT CTCAGTCATC TCTCGAAGAA GATACCAATC GGAGAAGCTA ATGAAATCTT TGCCATCACA AGCTGCGTTA GCGGCTCTGT TGTTCTCATC TTCGTCTCCA CAAGCTTTAG CGGTTAACGA ACCGGTTCAG CCGCCAGCTC CGACCATTAC TGTTGAAGCT CAGTCACCAA ATCTGTCGAC GTTTGGTCAG AACGTTTTGA TGACAGCACC GAATCCACAA GCTCAATCAT CGGATCTTCC TGATGGAACA CAGTGGCGAT ACAGTGAGTT TCTAAATGCT GTGAAGAAAG GTAAAGTTGA GAGAGTGAAA TTTAGTAAAG ATGGTTCTGT TCTTCAGCTA ACAGCTGTTG ATAATCGTCG TGCTACTGTT ATTGTTCCTA ATGATCCGGA TTTGATTGAT ATCTTGGCGA TGAATGGTGT CGATATATCG GTTTCGGAAG GAGAATCTGG AAATGGGTTG TTTGATTTCA TTGGTAATTT GCTTTTTCCT TTGTTGGCTT TTGGAGGGTT GTTTTATCTC TTTAGGGGAG GTCAGGGAGG TGCTGGTGGT CCTGGAGGTT TAGGAGGTCC TATGGATTTC GGAAGATCGA AATCGAAGTT TCAGGAAGTG CCGGAAACTG GGGTGACGTT TGGTGATGTT GCTGGAGCTG ATCAAGCTAA GCTTGAGTTA CAAGAAGTTG TTGATTTCTT GAAGAATCCT GATAAGTATA CTGCTTTAGG TGCTAAGATT CCTAAAGGGT GTTTGTTGGT TGGTCCACCG GGTACGGGGA AGACGCTTTT GGCTAGAGCT GTGGCTGGAG AAGCAGGAGT GCCGTTCTTT TCGTGTGCTG CTTCGGAGTT TGTGGAGCTT TTTGTTGGTG TGGGTGCTTC TAGAGTTAGG GATTTGTTTG AGAAGGCGAA ATCGAAAGCT CCTTGTATTG TGTTTATTGA TGAGATTGAT GCTGTGGGTA GGCAAAGAGG AGCTGGGATG GGTGGTGGAA ATGATGAGAG AGAACAGACG ATTAATCAGC TTTTGACTGA GATGGATGGG TTTTCTGGTA ATTCTGGTGT CATTGTGTTG GCTGCAACCA ATAGACCGGA TGTTCTTGAC TCCGCATTGC TGAGACCTGG TAGATTTGAC CGGCAAGTCA CAGTGGATAG GCCTGATGTA GCTGGAAGAG TCAAGATCCT GCAGGTGCAT TCTAGAGGGA AGGCTATTGG GAAGGATGTG GATTATGAGA AAGTTGCGAG GAGAACTCCG GGTTTCACTG GTGCTGATTT ACAGAACCTG ATGAATGAAG CTGCGATTCT TGCGGCTAGA CGTGAGCTTA AGGAGATAAG CAAGGATGAA ATATCCGATG CTCTTGAGAG GATCATTGCT GGACCGGAGA AGAAGAATGC TGTTGTCTCA GAGGAGAAGA AGAGACTTGT TGCTTATCAT GAGGCTGGGC ATGCTTTAGT TGGTGCACTT ATGCCGGAGT ACGATCCAGT GGCCAAGATA TCGATTATTC CACGTGGTCA AGCTGGTGGG CTCACCTTTT TCGCCCCTAG CGAAGAGAGA CTTGAGTCTG GATTGTATAG CAGAAGCTAC CTTGAGAATC AAATGGCTGT TGCACTTGGT GGAAGGGTTG CAGAAGAGGT GATCTTTGGT GACGAGAATG TAACAACCGG AGCATCAAAC GATTTCATGC AGGTGTCACG AGTGGCTCGC CAAATGGTTG AGAGATTCGG GTTCAGCAAA AAGATTGGAC AAGTTGCAGT TGGTGGAGCA GGAGGAAACC CTTTCTTGGG TCAAAGTATG TCATCACAGA AGGATTACTC AATGGCAACA GCGGATGTGG TTGATGCCGA AGTGAGAGAG CTGGTAGAGA AGGCGTACGT GAGGGCGAAA GAGATCATAA CAACACAAAT TGATATCTTA CACAAGCTTG CGCAGCTCCT AATTGAGAAA GAAACTGTGG ATGGAGAAGA GTTCATGAGC CTTTTCATTG ACGGACAAGC TGAGTTGTAT GTTTCTTAAT TAGCTTCAAT CTATACATAC TGTATGTTAA TAATATACAT TGACATGTTC AGAGAC |
| Length | 2326 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_8: 6356124.. 6358834 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G42270.1 |
| Description | FtsH extracellular protease family |
| TAIR curator summary | VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes. |
| Alias | [FTSH5][VAR1][VARIEGATED 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg940830 | elongation factor family protein |
| 2 |
Ahg482018 | FtsH extracellular protease family |
| 3 |
Ahg475077 | Translation elongation factor EFG/EF2 protein |
| 3.87298 |
Ahg939527 | Aldolase-type TIM barrel family protein |
| 4.69042 |
Ahg479910 | Protein kinase superfamily protein |
| 5.09902 |
Ahg495156 | CLPC homologue 1 |
| 6.32456 |
Ahg487706 | Small GTP-binding protein |
| 7.4162 |
Ahg476539 | signal peptide peptidase |
| 8.42615 |
Ahg489666 | GDP-D-mannose 3',5'-epimerase |
| 9.27362 |
Ahg491801 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|