| Annotation |
|---|
| Description | jgi|Araly1|887710|Al_scaffold_0271_3 |
| Sequence |
ATGATGGGGC CAATAAACGT GGACCGACTA AAAATAATAG AAGTTAAGTC GAAGATCAAG AACAGTCTCA CTAGACATGG CAATGGTCAT GATCACGATG TTGAAGAAGA AGAAGATGAG TATGACGAGC AAGACCCAGA AGAGCACGGA GCACCATATG AATCCTCTGC CGTAAGAGGT GGTGTAACGG GTAAACCTGA GTCTTTAAGT CATACCGGAG AAACTAATGT TCCAGCACCG GAGGAGATTG TTCCTCCAGG AACAAAGGTT TTTCCTGTCG TGTCTTCCGA GCACACCAAA CCCATTGAGC CTGTTTCATT ACAAGATACC TCTTACGGAC ATGAGGCACT GTCTGCTCCT GGAGGAGGTT CGGATTATCT TAGTGGAGAA GCTGGAGTAC CAGAGATTGC TGAGTCTCTT AGTCGGATGA AAGTGACTGA TGAGTCTCCT GATCAGAAAT CAAGACAAGG ATTTGGAGAA GACTTACCGA CGAGAAGCCA AGAATTTGGT CTGAAGAACG AATCTGATAT CAGCAAGGAT TCTCCGGCAA GACTTGGAGG AGAATCAAGA GCTGGTCTCG GGGAAGATTT TCAGAGAAGA AGTGATGATG TGAAAGCAGA GACTGGGTTG GGAAGAGACT TACCGACCGG AACTCATGAT CAGTTCTCAC CGGAACTATC TCGTCCTAAA GAGAGAGATG ATTTTGAGGA AACCAGAGAT GAGACGAAAC AGGAGAGGAA ACCGAGCACC TACACAGAGC AGTTAGCTTC AGCTACATCA GCCATAACCA ACAAAGCTAT AGCGGCGAAG AACGTCGTCG CCTCAAAGCT A |
| Length | 831 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_271: 9650.. 11245 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT5G52300.1 |
| Description | CAP160 protein |
| TAIR curator summary | encodes a protein that is induced in expression in response to water deprivation such as cold, high-salt, and dessication. The response appears to be via abscisic acid. The promoter region contains two ABA-responsive elements (ABREs) that are required for the dehydration-responsive expression of rd29B as cis-acting elements. Protein is a member of a gene family with other members found plants, animals and fungi. |
| Alias | [LTI65][RD29B][LOW-TEMPERATURE-INDUCED 65][RESPONSIVE TO DESSICATION 29B] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 9.38083 |
Ahg949787 | low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
| 13.4907 |
Ahg485985 | Regulator of chromosome condensation (RCC1) family protein |
| 15.5885 |
Ahg311978 | galactinol synthase 3 |
| 25.0599 |
Ahg941255 | |
| 26.0768 |
Ahg472273 | Dehydrin family protein |
| 29.4958 |
Ahg495838 | Fibronectin type III domain-containing protein |
| 31.3209 |
Ahg921008 | cold-regulated 47 |
| 31.9687 |
Ahg481185 | Late embryogenesis abundant protein, group 6 |
| 32.8634 |
Ahg350602 | high affinity nitrate transporter 2.7 |
| 38.4968 |
Ahg932059 | B-box zinc finger family protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
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| The four seasons |
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| Growth Chamber expression |
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