| Annotation |
|---|
| Description | jgi|Araly1|934330|scaffold_402318.1 |
| Sequence |
TCCGGAGAAA CTCACCGGAA ATGGATAATG ACGGTGGTGC TCCTCCTCCG CCGCCGACAG TAGTGGAGGA GCCTAAGAAA GCAGAGATTC GTGGAGTTGC TTTTAAAGAG CTTTTCAGAT TCGCCGACGG ATTAGATTAT GTATTGATGG GAATTGGCTC TGTTGGTGCT TTTGTCCATG GTTGCTCTTT ACCTCTGTTT CTTCGATTCT TCGCCGATCT TGTTAATTCC TTTGGTTCTA ATGCTAATAA CGTTGACAAG ATGATGGAAG AAGTTCTAAA GTATGCGCTT TACTTTTTAG TGGTTGGTGC TGCAATCTGG GCTTCTTCTT GGGCAGAGAT TTCGTGTTGG ATGTGGAGTG GAGAGAGACA AACAACGAAG ATGAGGATAA AGTATTTAGA AGCAGCTTTG AATCAAGACA TTCAGTTCTT TGATACAGAG GTTCGAACTT CAGATGTTGT CTTCGCCATT AACACCGACG CTGTTATGGT TCAAGACGCC ATTAGTGAGA AACTTGGTAA TTTTATCCAT TACATGGCGA CTTTTGTGTC TGGATTCATC GTGGGTTTCA CGGCGGTGTG GCAACTGGCG TTAGTGACTC TTGCGGTGGT TCCGTTGATA GCTGTGATCG GAGGAATTCA CACCACTACT CTCTCAAAGC TATCTAATAA GAGTCAAGAG TCTCTTTCAC AAGCTGGTAA TATCGTCGAA CAGACAGTGG TGCAAATCAG GGTAGTGATG GCTTTTGTTG GAGAATCAAG AGCTTCACAA GCTTATTCCT CAGCTTTAAA GATTGCTCAG AAACTTGGTT ACAAGACAGG TTTAGCTAAA GGAATGGGAC TTGGTGCTAC TTATATCGTT GTCTTCTGTT GCTACGCTCT CTTGCTTTGG TACGGAGGCT ACCTCGTTCG CCACCATTTG ACTAACGGTG GTCTTGCCAT TGCCACAATG TTCGCCGTCA TGATCGGTGG ATTGGCATTG GGACAGTCAG CACCGAGCAT GGCTGCATTT GCCAAAGCAA AGGTTGCTGC TGCAAAGATC TTTAGAATTA TTGATCACAA ACCTACGATA GAGCGTAATA GCGAGTCCGG TGTGGAGTTA GACTCGGTCA CGGGTCTTGT CGAGCTTAAA AACGTGGACT TTTCGTATCC GTCAAGGCCA GATGTTAAGA TTCTTAACAA CTTCTGCCTC TCTGTTCCCG CTGGGAAGAC CATTGCTTTG GTTGGGAGCA GCGGTTCAGG GAAAAGCACA GTCGTTTCGC TTATAGAGCG GTTTTACGAT CCGAACTCAG GACAAGTTTT ACTAGATGGG CAGGACCTGA AGACCCTGAA ATTGAGATGG TTAAGGCAAC AGATAGGGCT AGTGAGTCAA GAACCTGCAC TATTCGCCAC TTCTATTAAA GAGAATATAC TCTTAGGCCG TCCCGACGCA GATCAAGTCG AGATAGAGGA GGCAGCTCGA GTCGCAAATG CTCATTCTTT TATCATCAAA CTACCTGATG GCTTCGACAC ACAGGTTGGG GAGAGAGGAT TGCAGCTATC AGGTGGGCAG AAGCAAAGAA TTGCGATAGC AAGAGCGATG TTGAAGAACC CGGCAATACT TCTTTTAGAT GAGGCGACGA GTGCGTTGGA TTCTGAATCA GAGAAGCTTG TACAAGAAGC TTTGGATCGT TTCATGATTG GAAGGACTAC TCTCATCATC GCTCATCGTC TTTCTACCAT TCGAAAAGCA GACCTTGTTG CTGTGCTTCA GCAAGGAAGT GTCTCTGAGA TTGGAACGCA TGACGAGCTT TTTTCCAAGG GAGAAAACGG AGTCTATGCT AAGCTAATTA AAATGCAAGA AGCAGCTCAC GAAACCGCCA TGAGCAATGC AAGAAAGAGT AGCGCAAGAC CGTCAAGTGC TAGAAACTCG GTTAGCTCGC CAATAATGAC TCGGAATTCG TCATATGGAA GATCACCTTA TTCACGGAGA CTCTCGGATT TTTCAACTTC TGATTTTAGC CTCTCCATTG ACGCTTTTTC CTACCCAAAC TATAGAAACG AGAAGCTGGC CTTCAAGGAT CAAGCCAATT CATTCTGGCG ACTAGCTAAA ATGAACTCTC CAGAGTGGAA ATACGCTTTG CTCGGTTCGG TAGGCTCTGT CATTTGTGGC TCCCTCAGCG CGTTCTTTGC GTATGTCCTC AGCGCAGTCT TAAGCATCTA CTACAACCCG GACCATGAAT ACATGATCAA ACAGATTGAT AAGTACTGTT ATCTCTTAAT CGGTCTCTCT TCCGCCGCAC TTGTCTTCAA CACACTCCAG CATTCTTTTT GGGACATTGT GGGTGAGAAT CTAACCAAGA GAGTCCGTGA AAAGATGCTC AGCGCCGTAC TCAAGAATGA GATGGCTTGG TTTGATCAAG AGGAGAATGA AAGTGCAAGA ATTGCAGCAC GATTAGCCCT TGATGCCAAT AATGTGAGAT CAGCCATAGG AGATAGAATC TCCGTTATTG TGCAGAACAC AGCACTGATG CTAGTAGCTT GCACTGCTGG GTTTGTTCTA CAGTGGAGGC TTGCACTTGT CCTTGTCGCA GTCTTCCCCG TAGTTGTTGC TGCAACTGTC TTACAGAAAA TGTTTATGAC TGGATTCTCG GGAGACCTGG AAGCGGCGCA CGCCAAGGGA ACGCAGCTTG CTGGTGAAGC CATAGCTAAT GTCAGGACAG TTGCAGCCTT CAATTCGGAG GCAAAGATTG TTCGTCTCTA CACTGCAAAC CTAGAACCAC CATTGAAACG ATGCTTCTGG AAAGGACAAA TCGCTGGAAG TGGCTATGGT GTAGCTCAGT TCTGTCTTTA CGCATCTTAC GCTCTCGGGC TATGGTACGC ATCATGGCTT GTGAAACATG GCATCTCTGA CTTCTCCAAA ACAATAAGAG TCTTCATGGT TCTGATGGTC TCAGCCAATG GTGCTGCAGA GACGCTCACA CTGGCTCCTG ATTTCATTAA AGGTGGTCAA GCAATGCGCT CGGTTTTCGA ACTTCTTGAC CGGAAAACTG AGATTGAACC CGATGATCCT GATACCACCC CAGTCCCAGA CCGGTTACGC GGCGAAGTTG AACTCAAACA CATTGATTTC TCTTACCCTT CAAGACCAGA CATCCAGATT TTCCGTGACC TTAGCCTTCG TGCTAGAGCT GGCAAGACTC TAGCTCTTGT GGGTCCAAGC GGGTGTGGAA AAAGCTCGGT TATCTCCCTC ATCCAGAGGT TCTACGAACC GTCCTCAGGT CGAGTCATGA TCGATGGGAA AGACATAAGG AAATACAACC TGAAAGCCAT AAGGAAACAC ATAGCCATAG TCCCTCAAGA GCCGTGCTTG TTCGGAACCA CCATTTACGA AAACATTGCA TACGGACACG AGTGTGCGAC CGAAGCAGAG ATCATTCAAG CAGCGACTCT AGCCAGCGCC CACAAGTTCA TATCCGCACT ACCCGAAGGT TACAAGACGT ATGTCGGAGA GAGAGGCGTT CAGCTCTCGG GAGGACAGAA ACAGAGGATC GCAATCGCAC GTGCCCTCGT GAGAAAAGCA GAGATCATGC TGCTCGACGA GGCTACAAGC GCTCTTGATG CAGAGTCCGA GAGATCAGTC CAAGAAGCAT TGGACCAGGC TTGCTCTGGT AGAACATCGA TTGTCGTGGC TCATAGGCTA TCTACAATCA GGAACGCACA TGTGATCGCG GTGATCGATG ATGGAAAAGT CGCAGAACAA GGATCGCATT CGCATCTTCT CAAGAACCAT CCTGATGGAA TCTACGCGCG GATGATACAG TTGCAGAGAT TTACGCATAC TCAGGTGATT GGTATGACAT CAGGTTCAAG TTCTAGGGTT AAAGAAGATG ATGCTTAGTA CTTACTACTT TGGTCATTAT AGAAGAAGAA AGAAGAGTAA AAAAAAAAAA CAAACATCAG AAGATGTCTC TGATAAAAAC TCTACGAACT CATTTTCTCT TTTTTTTTTC TGTTTTGATT TTGGGGTTAC TTATTTTTGG AACTACGTTT CAGATTTGAT GGTATAGTAT TATTATTGTG T |
| Length | 4061 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 16670606.. 16675695 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G36910.1 |
| Description | ATP binding cassette subfamily B1 |
| TAIR curator summary | Belongs to the family of ATP-binding cassette (ABC) transporters. Also known as AtMDR1.Possibly regulates auxin-dependent responses by influencing basipetal auxin transport in the root. Exerts nonredundant, partially overlapping functions with the ABC transporter encoded by AT3G28860. PGP1 mediates cellular efflux of IAA and interacts with PIN genes that may confer an accelerated vectoral component to PGP-mediated transport. The non-polar localization of PGP1 at root and shoot apices, where IAA gradient-driven transport is impaired, may be required to confer directionality to auxin transport in those tissues. |
| Alias | [ABCB1][ATPGP1][PGP1][ATP-binding cassette B1][ARABIDOPSIS THALIANA P GLYCOPROTEIN1][P-GLYCOPROTEIN 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.44949 |
Ahg479246 | YELLOW STRIPE like 5 |
| 2.82843 |
Ahg484445 | Glycosyl hydrolase family 38 protein |
| 10.0995 |
Ahg487306 | Cellulose synthase family protein |
| 10.247 |
Ahg929675 | nuclear RNA polymerase D2B |
| 13.4164 |
Ahg495409 | pectin methylesterase PCR fragment F |
| 16.7033 |
Ahg489218 | XS domain-containing protein / XS zinc finger domain-containing protein-related |
| 20.0749 |
Ahg486620 | cysteine synthase C1 |
| 21.166 |
Ahg473497 | GT-2-like 1 |
| 21.7715 |
Ahg488835 | calcium-dependent protein kinase 19 |
| 22.6495 |
Ahg475696 | cytosolic NADP+-dependent isocitrate dehydrogenase |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|