Detail


ID : Ahg934404

Blast(Query):  A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|934404|scaffold_402392.1
Sequence
AAATCTCTCG CGTCGAAACC ATGAACAGCC GCGGCGATAA AGACAAAAGA GTTCGTAGGA TGTTATTTGA CATGATTACA TTTGCATTTT CCTGTGATGA TGGTAAACAA AACAATGTGA TGGTAATCTC AAAAACCCCA CTTACAGACG AGTGTTTCAG GGTTCTTGGC TCTTTGGAAG CTAGAGGTTT CAATGTTCTC TTGGTGCAGT ATGATGATGA GGCAGAGCTT TTTCGTTCTG CAGACGCAAT TTTTGACTCT ACAACATTAT TAGATGGTTC ACGTCCTATG GACTTTGACA GTGTTTCTTA TTCTAGCTTC GGAAGCTGGG AAACTGATTC TGATCCTGGC AACTGTACTG ATACTGGTTT CGAAGAGCAT AAGATAAGAA TGCCTTCGGT GCCCTCTAAG CTTCTTCTCC TTTCTTTGAT TCCTTCGTTG ACTCCGTATC ATTCTGGTTT GAGTTCTAAT CGTTTGAAAC CTCTTGAAAA GTGTGATTGG CGTGGTAATC TTAGTTAACA TTTCGTTTCC TTCTCCTC
Length538
Protein Sequence
Protein Residue
Map Locationscaffold_4: 17023018.. 17024806
Download Sequence
A.thaliana
AGI-codeAT2G37478.1
Descriptionconserved peptide upstream open reading frame 52
TAIR curator summaryUpstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF52 represents a conserved upstream opening reading frame relative to major ORF AT2G37480.1
Alias[CPuORF52][conserved peptide upstream open reading frame 52]
Gene coexpression
MR
MR Locus Description
9.74679 Ahg895882 TRAF-like family protein
10.198 Ahg477109 Homeodomain-like superfamily protein
12.0416 Ahg903224 Homeodomain-like superfamily protein
16.9706 Ahg348938 RING/U-box superfamily protein
18.735 Ahg492401 phosphoglucan, water dikinase
21.5407 Ahg490488 TRAF-like family protein
22.0227 Ahg926922 conserved peptide upstream open reading frame 5
22.4499 Ahg889064 Leucine-rich repeat protein kinase family protein
27.8209 Ahg951353 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
27.9821 Ahg312058 phloem protein 2-A10
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression