| Annotation |
|---|
| Description | jgi|Araly1|942945|scaffold_603489.1 |
| Sequence |
TGTTTCCTAT GATACAGGAA ATGATGGATG AGGTATCAGT AGGGGATGTG AGTAGGATTG ATGAAGCTGA TGTTGCTCAC CTTCAATTCA AGAATAGTGA GCATTCGTTT AAACCGGAGA ACTGTGAAGT CCGGGAAGTA AAAGATGTGC AGGTTCAGAG AGAAGCCGGT TCTCCTGATT GTTCGTATGG TGTAATAGCA GAGTTTTTAG ATGGTAAGAA TGGTGACCCT GTGGAGCAAA TAGGAAATGA ACCATGTTCT AGCCGGCAGA ATGCGGGCGA TGTTGTCGAG GAGTTGACTG TTAAAACTTG TGAGGGTTCA AGCATGGCTA TAGTTGGTAG ACCAAGTAGT AGAGCTAGGT TAGAGATGAA TCGCAGCCAG TTTCTGCATC GTTTTCCGCT AGATGGTGAT TTACCTGGTA GTAGTTCTAT GAGTAAGAAG GAAAATAACA GGGGAACAAT AGGTATCTTG AGAAATGCAG GTAAAATGTC TTTGCCTGAG ACTTCAACTG GACAACTGGC TATTGTTACT GTTAATGGAG AAGCTAATGA GCTTTTGAAA AATGTTGAAC GAAATCCTGT ACCCGTAGAG GCATTGTCCC ATGAAGGCAT TAAGACAAAG ATGTTATCAC AGTCTGGGTT TTCTCAGTTT TTTGTTAGGA AAACATTGAA AGGCAAGGGA GTCACATTTA GAGGCCCGCC ACACGATATA TCTAAAGCTA GCAATATGGA TCAGCAAACT GTAGCTAGTT CTGGTAGCCC TTTAGTAATA TCAAATACTC CAGCAAAGAT TTCTAGCAGC ATCCCTTTGG CGGCTTATGA TGGTTTGCCT TGCTTGCCTT CCAACGCCAG TAAACCGTCT TCTTGTGGAA GCCCTTCAGA TATACATAGA GGTTGTGGAG GTGAAGGTTT AAGTCTGAGA GAATGGTTGA AGTCAGAGCG GCAGGAAGTT AATAAAGCAG AATGTATGTA TATCTTTAGG CAGATCGTGG ATCATGTGGA TTGTTCTCAT TCTCAAGGAG TTGTTTTATG TGACCTACGA CCATCTTCAT TCAAAATTTT CAAGGAAAAT GCAGTCAAGT ATGTGGGTTC AGGTTCTCAA CGAGAGTCAT TTTACAGCAA CATGAACAAA GAGACTTTAA GTCAACTCGA AAACCCTCTG GTTAGAAGGC GGTTAGGAGA TACTTATAGT CCCTCTATCC CTGCAAAGAA GCAGAAATCA GGTGGACCAA GCTCTAGACA GTGGCCTATG TTTCAACGAG CTGGTGGCGT CAATATCCAA ACTGAAAATG GTGATGGCGC AATACATGAG TTTCATTTCA GATCTAGTCA ACCTCATTGT AGTACAGCTG CCCGTCCTTT TACTTCAGTG AGTGAGCAGT TAGAAGAGAA ATGGTATGCG AGCCCTGAGG AGCTGAGGGG TGACATGCGT TCAGCCTCTT CAAACATCTA TAGTTTGGGT ATTCTTCTTT ATGAGTTGCT TAGTCAATTT CAGTGTGAAA GAGCTCGCGA GGCTGCAATG TCTGATATTC GACACCGAAT TCTTCCTCCC AAATTTCTGT CGGAGAATCC AAAGGAAGCT GGGTTTTGTC TATGGTTACT TCATCCAGAA TCTTCATGCC GACCATCAAC CAGGGACATC TTACAGTCTG AAGTAGTTAA TGGAATCCCG GATTTGTATG CTGAAGGCTT ATCTTTATCC ATTGAGCAAG AGGACACAGA GTCTGAACTG TTGCAGCATT TCCTTATCTT GTCCCAAGAG AAAAGGCAGA AGCATGCTGG AAAGTTGATG GAAGAAATTG CGTCTGTGGA AGCAGATATC GAAGAAATTG TCAAGAGACG TTATGCCATA GGGCCTCTAT CTCTGGAAGA AGCTTCTAGC TCATCTCCTG CTTCTAGTGT ATCTGAAATG AGACTGATCA GGAACATTAA TCAGCTTGAA AGCACTTATT TCGCAGCAAG GATCGATGCC CATCTCCCTG AAGCACGTTA TAGGCTACGC CTGGATAGAG ATCTGCTAAG AAATCGTGAT AATACTGTAG CAGAAGTAGA AAACAGTGAG ACTTGGAGCT CAGATGATCG TGTTGGAGCG TTCTTTGATG GGTTATGCAA ATATGCTCGA TATAGTAAGT TTGAAACTCG GGGTGTGCTG AGGACCAGTG AGTTGAACAG CACTTCAAAT GTGATTTGTT CTCTGGGTTT CGATCGGGAC GAGGATTATT TTGCCACCGC TGGTGTGTCA AAGAAAATTA AGATATATGA GTTCAATTCC CTTTTCAACG AATCTGTTGA CATTCACTAT CCAGCCGTAG AAATGCCAAA TAGATCAAAG CTTAGTGGCG TTTGCTGGAA CAACTACATT AGGAACTACC TAGCTTCCTC TGATTATGAT GGTATTGTCA AGTTATGGGA TGTGACAACA GGACAGGCCA TTTCACATTT CATAGAGCAC GAGAAGAGGG CTTGGTCTGT TGACTTCTCT GAAGCTTGTC CGACAAAATT AGCCAGTGGA AGCGATGATT GTTCTGTGAA GCTATGGAAC ATCAATGAGA GGAACTGCTT AGGAACAATC AGGAACATTG CAAACGTTTG TTGTGTGCAA TTTTCTCCAC AGTCCTCTCA TTTGCTAGCC TTTGGATCAT CAGATTTCAG AACATACTGC TACGATCTAC GGAATTTAAG AACTCCTTGG TGCATACTGT CAGGACACAA CAAAGCAGTT AGCTACGCGA AATTCTTGGA TAATGAAACT CTTGTCACAG CATCAACTGA TAACACGTTA AAGCTTTGGG ATCTTAAGAA AACCACTCAC GGTGGCCTCT CCACAAATGC TTGCAGCTTA ACTTTTGGCG GCCATACAAA TGAGAAGAAC TTTGTTGGGT TGTCTACTTC CGATGGATAT ATAGCTTGTG GCTCTGAGAC AAATGAGGTT TATGCCTATC ATCGGTCTCT TCCTATGCCT ATTACCTCGT ACAAGTTTGG TTCTATTGAT CCTATATCAG GTAAGGAGAT AGAGGAGGAC AACAACCTAT TTGTTTCAAG CGTTTGCTGG AGAAAAAGAT CGAATATGGT TGTTTCAGCT AGCTCAAATG GGTCTATCAA AGTTCTACAG TTGGTCTGAA ATAAATATAC ACACACACA |
| Length | 3139 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 19592018.. 19596669 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G11110.1 |
| Description | SPA1-related 2 |
| TAIR curator summary | Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. |
| Alias | [SPA2][SPA1-related 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 3.60555 |
Ahg913525 | glutamate receptor 3.3 |
| 4 |
Ahg488271 | Pentatricopeptide repeat (PPR-like) superfamily protein |
| 4.12311 |
Ahg476937 | phosphatidylinositol-4-phosphate 5-kinase 2 |
| 4.58258 |
Ahg946844 | Topoisomerase II-associated protein PAT1 |
| 5 |
Ahg487084 | Concanavalin A-like lectin protein kinase family protein |
| 6.9282 |
Ahg951429 | nitrogen fixation S (NIFS)-like 1 |
| 9.32738 |
Ahg941174 | Transducin family protein / WD-40 repeat family protein |
| 12.7279 |
Ahg950958 | MEI2-like protein 1 |
| 13.7477 |
Ahg495780 | CwfJ-like family protein / zinc finger (CCCH-type) family protein |
| 13.9284 |
Ahg491860 | CDK-activating kinase 1AT |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|