Detail



ID : Ahg948643

Blast(Query) A.halleri   /   A.thaliana (NOT RECIPROCAL)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|948643|scaffold_800530.1
Sequence
CCCTAATTTT TCCTCTCCTT CAATGGCGAT TTCATCACCA GCCGCTACTT CTTCCTCCTC AAAACTCCTC AATTCCTTCA CTTCTCCATC AATCTCCACC GTTAAACCAA AATCCCTAAC TCTCTCTTCC TCCTTCCTCC CACCAATCAC ATCTCTCTCC ATCACCACCA CCACAACAAC AACAACATCT TCCTACCCTC ACCGTCTCCG TCGCGCCTTC ACCGTACGCG CCGCCAGAGG AAAATTCGAA CGCAAGAAAC CTCACGTGAA CATAGGAACA ATAGGTCACG TCGACCATGG CAAAACAACA CTAACCGCAG CGTTAACAAT GGCTTTAGCT TCAGTAGGAA ACAGTGTAGC CAAAAAATAC GACGAAATCG ACGCAGCTCC TGAAGAAAGA GCTCGTGGTA TCACAATCAA CACTGCAACG GTCGAATACG AAACAGAGAA TCGTCATTAC GCTCATGTTG ATTGTCCTGG TCATGCTGAT TATGTCAAGA ACATGATTAC TGGTGCTGCT CAAATGGATG GTGCGATTCT TGTTGTCTCT GGTGCTGATG GACCAATGCC ACAAACTAAA GAACATATCT TGTTGGCGAA GCAAGTTGGT GTTCCTGATA TGGTTGTGTT TCTTAATAAA GAAGATCAAG TTGATGATGC TGAGCTTTTA GAGCTTGTTG AGCTTGAGGT TCGCGAGCTT TTATCGTCTT ATGAGTTTAA TGGCGATGAT ATTCCGATTA TTTCCGGTTC TGCTTTGTTA GCTGTAGAGA CTTTGACTGA GAAACCTAAT GTTAAGAGAG GTGAGAATAA ATGGGTTGAT AAGATTTATG AGTTGATGGA TTCTGTTGAT AGTTATATCC CGATTCCGAC TAGGCAGACG GAGTTGCCGT TTTTGTTGGC GGTTGAGGAT GTTTTTTCGA TTACTGGTCG TGGTACGGTT GCTACGGGGC GTGTCGAAAG AGGTTGTGTT AAGGTTGGGG AGACTGTTGA TTTGGTGGGA TTGAGAGAGA CTAGGAATTA TACGGTTACC GGGGTGGAAA TGTTTCAGAA GATTCTTGAT GAAGCTATGG CTGGTGATAA TGTAGGATTG TTGCTTAGAG GTATACAAAA GGCGGATATT CAGAGAGGTA TGGTTTTGGC TAAGCCGGGT TCGATTACTC CACATACTAA GTTTGAAGCG ATTGTTTATG TGTTGAAGAA AGAAGAAGGT GGAAGACATT CGCCGTTTTT CGCTGGGTAT AGACCTCAGT TTTACATGAG GACTACGGAT GTTACGGGTA AAGTGACTAA GATTATGAAT GATAAAGACG AGGAATCGAA GATGGTTATG CCTGGTGATC GTGTTAAGAT TGTTGTTGAG CTTATTGTGC CTGTTGCTTG TGAACAAGGG ATGAGGTTTG CTATTAGAGA AGGAGGAAAG ACTGTTGGTG CTGGAGTGAT TCAGTCGATT ATCGAATGAG AAATTAGTGG GTAAAAGAG 
Length1479
Protein Sequence
Protein Residue
Map Locationscaffold_8: 2889896.. 2891374
Download Sequence
A.thaliana
AGI-codeAT4G20360.1
DescriptionRAB GTPase homolog E1B
TAIR curator summary
Alias[ATRAB8D][ATRABE1B][RABE1b][RAB GTPase homolog E1B]
Gene coexpression
MR
MR Locus Description
5.2915 Ahg949546 chloroplast RNA-binding protein 31B
10.9545 Ahg483050 light harvesting complex photosystem II
11.225 Ahg951392 kinesin like protein for actin based chloroplast movement 2
11.3137 Ahg359089 alpha/beta-Hydrolases superfamily protein
17.3494 Ahg475077 Translation elongation factor EFG/EF2 protein
31.7805 Ahg936256
37.8682 Ahg940830 elongation factor family protein
38.5357 Ahg481099 DNAJ heat shock family protein
42.2374 Ahg494803 FtsH extracellular protease family
45.3211 Ahg314966 FAD/NAD(P)-binding oxidoreductase family protein
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression