| Annotation |
|---|
| Description | jgi|Araly1|327070|fgenesh1_pm.C_scaffold_6002290 |
| Sequence |
ATGTCTGGTT CTGTTTCTGG TTGTGGTTCT GGTGGTTGTA GTATTGTATG GTTTAGAAGA GATCTTAGGG TTGAAGATAA TCCAGCTTTA GCTGCAGCAG TAAGAGCTGG TCCAGTGATT GCTCTGTTTG TATGGGCACC AGAAGAAGAA GGACACTATC ATCCAGGTAG GGTTTCTAGG TGGTGGCTCA AGAACAGTTT GGCTCAGCTT GATTCTTCTC TTAGAAGTCT TGGTACTTGT CTCATCACCA AGAGATCTAC TGATAGTGTT GCTTCTCTTC TTGATGTTGT TAAATCCACT GGTGCTTCTC AGATCTTCTT CAACCATTTG TATGATCCAT TGTCTTTGGT GCGTGATCAC CGTGCTAAAG ATGTTTTGAC GGCACAAGGC ATAGCGGTTC GATCATTCAA CGCAGATTTG CTTTATGAGC CGTGGGAAGT GACTGATGAA TTAGGCCGTC CTTTCTCTAT GTTTGCTGCG TTTTGGGAAA GATGTCTTAG TATGCCTTAT GACCCTGAGT CTCCTCTTCT TCCACCTAAG AAGATCATTT CAGGGGATGT GTCTAAGTGT GTTTCGGATC CATTGGTCTT TGAAGATGAA TCAGAGAAAG GAAGTAATGC ACTTCTGGCT CGTGCTTGGT CTCCGGGATG GAGTAATGCT GATAAAGCTC TCACAACGTT CATAAACGGA CCATTGATTG AATACTCTAA GAACCGCAGG AAAGCTGATA GTGCCACAAC CTCGTTTCTT TCTCCACACT TGCATTTTGG GGAAGTGAGT GTGAGAAAAG TTTTCCATCT TGTTCGGATC AAGCAGGTCG CGTGGGCAAA CGAAGGAAAC GAGGCTGGGG AAGAAAGTGT GAATCTTTTC CTGAAATCGA TTGGTCTGAG GGAGTATTCT AGATATATAA GTTTTAACCA TCCATACTCC CATGAAAGAC CGCTTCTTGG CCATCTAAAG TTCTTCCCTT GGGCTGTGGA TGAGAACTAT TTCAAGGCAT GGAGACAAGG CCGGACTGGA TATCCGTTGG TCGATGCCGG GATGAGAGAG TTATGGGCTA CTGGTTGGTT GCACGATCGC ATAAGAGTAG TTGTTTCAAG CTTCTTTGTT AAAGTGCTTC AATTGCCATG GCGATGGGGG ATGAAGTATT TCTGGGACAC CCTTATTGAT GCGGATTTAG AAAGTGATGC TCTTGGTTGG CAATACATTA CTGGTACTCT CCCGGATAGC CGAGAGTTTG ATCGCATAGA TAATCCTCAG TTTGAAGGGT ACAAGTTTGA CCCAAATGGG GAATACGTAA GGCGATGGCT TCCAGAACTC TCTAGACTCC CCACAGACTG GATACATCAT CCGTGGAACG CACCTGAGTC TGTTCTTCAA GCTGCTGGTA TCGAGCTTGG ATCAAACTAT CCTCGACCAA TTGTAGGATT AGATGAAGCA AAAGCACGGC TTCATGAAGC GCTTTCACAG ATGTGGCAAC TAGAAGCTGC TTCAAGAGCA GCAATAGAGA ACGGATCCGA AGAAGGACTT GGAGATTCTG CTGAGGTGGA AGAAGCTCCT ATAGAGTTCC CAAGGGACAT CACAATGGAA GAGACTGAAC CAACCAGACT CAACCCAAAC AGGAGATATG AGGATCAGAT GGTTCCAAGC ATTACTTCTT CTTTGATCAG ACCTGAAGAA GACGAAGAGT CGTCTCTGAA TTTGAGAAAT TCAGTAGGAG ATAGCAGAGC AGAGGTTCCG AGGAACATGG TCAACACCAA CCAAGCTCAG CAGCGGAGAG CAGAACCGGC TTCAAACCAA GTCACTGCTA TGATTCCAGA ATTTAATATC AGAATTGTTG CAGAGAGCAC TGAAGACTCA ACAGCGGAAT CTTCCAGCAG CGGAAGAAGA GAGAGAAGCG GAGGCATAGT CCCCGAGTGG TCTCCTGGGT ACTCAGAACA GTTCCCTAGT GAAGAAAATG GGATTGGAGG AGGAAGTACA ACATCTAGCT ACTTGCAGAA TCACCACGAA ATACTGAACT GGAGACGGCT TTCACAAACC GGGTATGTAA CTTGCAAATC CAAGTTTCAG TAA |
| Length | 2073 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_6: 16945484.. 16947819 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G08920.1 |
| Description | cryptochrome 1 |
| TAIR curator summary | Encodes CRY1, a flavin-type blue-light photoreceptor with ATP binding and autophosphorylation activity. Functions in perception of blue / green ratio of light. The photoreceptor may be involved in electron transport. Mutant phenotype displays a blue light-dependent inhibition of hypocotyl elongation. Photoreceptor activity requires light-induced homodimerisation of the N-terminal CNT1 domains of CRY1. Involved in blue-light induced stomatal opening. The C-terminal domain of the protein undergoes a light dependent conformational change. Also involved in response to circadian rhythm. Mutants exhibit long hypocotyl under blue light and are out of phase in their response to circadian rhythm. CRY1 is present in the nucleus and cytoplasm. Different subcellular pools of CRY1 have different functions during photomorphogenesis of Arabidopsis seedlings. |
| Alias | [ATCRY1][BLU1][CRY1][HY4][OOP2][BLUE LIGHT UNINHIBITED 1][cryptochrome 1][ELONGATED HYPOCOTYL 4][OUT OF PHASE 2] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 2.82843 |
Ahg491431 | ENTH/VHS/GAT family protein |
| 3.4641 |
Ahg480310 | NAD-dependent malic enzyme 1 |
| 5.47723 |
Ahg471824 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain |
| 7.74597 |
Ahg491231 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
| 14.4222 |
Ahg493188 | Hyaluronan / mRNA binding family |
| 14.4914 |
Ahg893981 | Myosin family protein with Dil domain |
| 15.9687 |
Ahg941394 | beta-amylase 3 |
| 16.2481 |
Ahg357610 | |
| 16.9706 |
Ahg479246 | YELLOW STRIPE like 5 |
| 18 |
Ahg349401 | Protein of unknown function (DUF1423) |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|