| Annotation |
|---|
| Description | jgi|Araly1|471868|fgenesh2_kg.1__1822__AT1G16720.1 |
| Sequence |
TTGCGCTCTG TTTTTGTTGC AGAAGCAGAG TTTCAAAAAA TGGTGGGTAG TATTGTTGGC AGTAACATGG CGGCCACTGA TGCGAGGTTT CTAAGCTCCA ATTTTGGCAA CACTTTCAGC ATCAACACCA GAATTCACAG ATTCCATGAT CGCTCCCAAA TCGTAATCCC TAGGGCTCAG TCTTCTTCTT CTCCGTCTCC ATCTCCACCC TCCGATAAAA AGAAGACTAA GACCCGACCC GGAACCACAA CTACTAAGGA AAGCGAAGAG ACGGTGGCCA AGAAGCTCGA CGTTTCTCCG CCGCCGACCG CTCAATCACC ACCGTCTCCG CCTACACTGA AATTGGACGA TGTGAATCCT GTGGGGTTAG GACGACGATC GCGGCAGATT TTCGACGAGG TGTGGCGGAA ATTCTCTGGA TTAGGTCAGA TGTCGAGGAC CACCCGACCC GATGAGCAGG AGACTCTTGA TAGTCTTCTC ATTAGAGAAG GACCTATGTG TGAGTTCGCT GTTCCCGGCG CTCAAAACGT TACCGTTTTA GTCGTCGGAG CCACTAGCCG AATTGGCCGT ATCGTTGTCC GTAAACTCAT GCTCCGTGGC TACACCGTCA AGGCACTGGT GAGGAAACAA GATGAGGAAG TGATGAGTAT GTTGCCAAGA TCAGTGGATA TTGTTGTTGG AGATGTTGGC GAACCGTCAA CACTCAAATC CGCTGTTGAA AGCTGCAACA AGATCATCTA CTGTGCGACT GCTCGGTCTA CGATTACTGC AGACCTTACC CGGGTTGATC ATTTGGGTGT TTATAACCTC ACCAAGGCTT TTCAGGATTA CAATAACAGA CTAGCGCAAT TAAGAGCGGG TAAAAGCAGC AAAAGCAAGC TTCTAATAGC TAAGTTCAAA TCGGCTGAGT CACTCGATGG TTGGGAAATT CGTCAAGGAA CTTACTTTCA AGACACAACT GCTTCCAAAT ATGATGGTGG GATGGATGCT AAGTTCGAGT TCACGGAAAC TGAGAGAGCT GAGTTTTCAG GTTATGTTTT CACCCGAGGA GGATATGTTG AGTTGTCGAA GAAACTTTCA CTTCCATTGG GTACCACTCT TGACAGGTAC GAAGGCTTAG TTCTTTCTGT TGGTGGGAAT GGAAGATCCT ATGTTGTAAT CCTTGAAGCT GGTCCATCAT CAGATATGTC TCAGAGCAAA CAGTATTTCG CAAGGATCAG TACCAAAGCA GGTTTTTGTC GGGTAAGGGT GCCATTTTCA GCTTTTCGTC CGGTTAACCC AGAAGATCCA CCGCTAGATC CATTTCTTGT TCACACATTG ACAATACGCT TTGAGCCTAA AAGACAGAGA CCTGTTGATG GACTTGCTGC TGCGCAACAA GATCTGAGAA GTTTTAGCCT TGTATTCGAG TACATAAAAG CTTTGCCTGC GGGTCAAGAA ACAGACTTTA TTCTGGTATC GTGTACTGGT TCGGGAGTAG AACCCAACAG AAGGGAGCAA GTGTTGAAAG CCAAGAGGGC TGGTGAAGAT TCTTTGAGGA GATCAGGCCT TGGTTACACC ATCATTCGTC CCGGCCCCTT GAAGGAGGAA CCAGGCGGGC AACGAGCTCT GATATTTGAT CAAGGAAACA GAATTTCTCA GGGCATTAGT TGCGCGGATG TGGCTGATAT ATGTGTCAAG GCACTGCATG ATTCAACCGC TAGAAACAAA AGTTTTGATG TTTGCCATGA ATATGTCGCT GAGCAAGGAA TAGAGCTCTA TGAGCTGGTG GCTCATTTGC CAGACAAGGC GAACAACTAT CTGACTCCGG CTTTATCTGT ACTTGAGAAG AACACATGAG AAGTAGAATC ATTGATTCCA TTTTGTCTAG TGTACTCATC TCAAGCTCTG ATACGCGTTC CATACATATA TACATACGTA CATGTATAAC TTGTACATAC AAGAATCTCT TTGGTCTCTT TATGTCCATT AACATTTATT TCTTATATTC AACTCTAAAT TTGTGTGCTA ATA |
| Length | 2013 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_1: 6682831.. 6686140 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT1G16720.1 |
| Description | high chlorophyll fluorescence phenotype 173 |
| TAIR curator summary | Encodes HCF173, a protein with weak similarities to the superfamily of the short-chain dehydrogenases/reductases. HCF173 is involved in the initiation of translation of the psbA mRNA. Mutants shows a high chlorophyll fluorescence phenotype (hcf) and are severely affected in the accumulation of PSII subunits. The protein HCF173 is localized in the chloroplast, where it is mainly associated with the membrane system and is part of a higher molecular weight complex with psbA mRNA as a component of this complex. |
| Alias | [HCF173][high chlorophyll fluorescence phenotype 173] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 7.48331 |
Ahg922817 | plastid movement impaired1 |
| 7.93725 |
Ahg481465 | glycine decarboxylase P-protein 2 |
| 9.79796 |
Ahg944743 | Myosin heavy chain-related protein |
| 10.7238 |
Ahg476761 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain |
| 11.0905 |
Ahg493490 | phytoene desaturase 3 |
| 13.6382 |
Ahg470732 | fructose-2,6-bisphosphatase |
| 14.7309 |
Ahg496704 | general control non-repressible 5 |
| 15.5563 |
Ahg492115 | mannose-1-phosphate guanylyltransferase (GDP)s;GDP-galactose:mannose-1-phosphate guanylyltransferases;GDP-galactose:glucose-1-phosphate guanylyltransferases;GDP-galactose:myoinositol-1-phosphate guanylyltransferases;glucose-1-phosphate guanylyltransferase |
| 16.9706 |
Ahg943760 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| 17.6635 |
Ahg488319 | carbonic anhydrase 2 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|