| Annotation |
|---|
| Description | jgi|Araly1|946646|scaffold_702875.1 |
| Sequence |
CAAAACGATT AGCTAAGAAA AATGGTCTCC GGAAGCGGTA GCAAAACCAG CGGTGGTGAG GCAGCTTCCT CAGGCCATCG CGTCAATCGG AGCCGTCACA CCAGCGCAGA ACAAGCTCAG TCGTCAGCAA GCAAAGCCCT AAGGTCACAG AATCAGCAGC CGCAAAACCA CGGCGCCGGA ACGGAATCCA CAAGCAAAGC AATTCAACAG TACACTGTCG ACGCGAGACT TCACGCCGTC TTCGAACAAT CCGGAGAGTC AGGTAAGTCG TTCGATTACT CGCAGTCTCT TAAAACGGCG CCGTACGATC CTTCCGTACC GGAGCAGCAG ATCACAGCTT ATCTCTCGCG GATCCAACGC GGTGGCTATA CCCAGCCTTT TGGCTGCTTG ATCGCCGTCG AAGAATCCAC CTTCACAATC ATCGGTTACA GTGAAAATGC GCGGGAAATG CTAGGGCTCA TGTCTCAATC TGTACCAAGC ATCGAGGAGA TATCGGAGGT TCTTACGATT GGTACTGATT TGCGATCTCT CTTCAAGTCA TCGAGCATCG TTCTCCTCGA ACGCGCGTTC GTGGCTCGAG AGATCACACT TCTGAATCCG ATTTGGATTC ACTCTAAGAA CACTGGTAAA CCTTTTTACG CGATTCTCCA CAGGGTTGAT GTTGGAATTT TGATCGATTT AGAGCCGGCT CGAACCGAGG ACCCGGCGCT TTCAATCGCC GGAGCAGTCC AATCGCAGAA ACTTGCGGTC CGTGCGATTT CTCATTTACA ATCCTTACCT GGAGGAGACA TCAAGCTTCT ATGTGACACT GTTGTGGAAA GCGTTAGAGA TCTTACTGGC TACGACCGCG TTATGGTGTA CAAGTTTCAT GAAGATGAAC ATGGCGAAGT CGTAGCGGAG AGTAAACGGG ACGATTTAGA GCCTTACATC GGTCTGCATT ATCCGGCTAC TGATATTCCT CAGGCATCTC GGTTCTTGTT CAAGCAGAAC CGTGTTAGGA TGATTGTAGA TTGCTATGCG TCACCGGTTC GTGTGGTTCA AGACGATAGG CTAACGCAGC CTATATGCTT GGTGGGTTCG ACTTTGCGAG CTCCTCATGG CTGTCACGCT CAATACATGA CTAACATGGG CTCTATTGCG TCGTTAGCCA TGGCAGTTAT AATAAATGGA AACGAAGAAG ATGGTAACGG TGGTGTTAAT ACTGGAGGAA GAAACTCGAT GAGGCTTTGG GGTTTAGTTG TTTGCCATCA CACATCGGCT CGTTGCATAC CTTTTCCTTT GAGGTATGCT TGTGAGTTTC TTATGCAGGC CTTTGGCTTA CAGCTAAACA TGGAGTTGCA GTTAGCCTTG CAGGTGTCTG AAAAACGCGT TCTGAGAATG CAGACACTGT TATGCGATAT GCTTCTGCGT GCCTCACCCG CGGGAATTGT CACGCAGAGG CCTAGTATCA TGGATTTAGT AAAATGTAAC GGTGCTGCAT TTCTTTACCA AGGGAAGTAT TATCCGTTGG GTGTGGCTCC GACTGAGGCT CAGATAAATG ACATTGTGGA GTGGTTGCTT GCTAACCATT CTGATTCAAC CGGGTTAAGC ACAGATAGTT TAGGCGATGC GGGTTATCCT CGGGCAGCTG CTTTGGGAGA TGCTGTGTGC GGTATGGCAG TCGCGTGTAT CACAAAAAGG GACTTCCTTT TCTGGTTTCG GTCTCATACT GAGAAAGAAA TCAAATGGGG AGGGGCTAAG CACCATCCTG AGGATAAAGA TGATGGTCAG CGGATGCATC CGCGTTCTTC GTTCCAGGCT TTTCTCGAAG TTGTTAAGAG CCGATGTCAG CCATGGGAAA CTGCTGAAAT GGACGCTATT CATTCGCTCC AGCTTATTCT AAGAGATTCT TTCAAAGAGT CTGAAGCGGT GGACACTAAA GCTTCTGCAC CTGGGGCGGT TCAGCCACAT GGGGATGATA TGGCAGAGCA AGGGATGCAG GAGATAGGTG CAGTTGCGAG AGAGATGATT AGGCTTATTG AGACTGCGAC GGTTCCTATA TTAGCTGTGG ACATTGATGG CTGCATCAAT GGGTGGAATG CCAAGATCGC AGAGCTGACT GGTCTTTCTG TTGAAGAAGC TATGGGAAAG TCTCTTGTTC GCGATTTGAT ATACAAAGAG TACGAAGAAA CAGTTGATAG GCTTCTTTCT TGTGCTCTCA AAGGGGATGA AGGCAAGAAT GTGGAGGTCA AGCTGAAAAC TTTTGGTCCC GAGCTACAAG GGAAAGCAGT GTTTGTGGTT GTCAACGCAT GCTCAAGCAA GGACTACTTA AACAACATCG TTGGAGTCTG CTTTGTTGGA CAAGATGTAA CCGGTCATAA AATTGTTATG GACAAGTTCA TCAACATACA AGGCGATTAC AAGGCCATCA TCCATAGCCC GAACCCTCTG ATCCCTCCAA TCTTTGCAGC GGATGAGAAT ACGTGCTGCC TTGAGTGGAA CACCGCAATG GAAAAGCTCA CAGGGTGGCC TCGCAGCGAA GTGATTGGAA AATTGCTTGT TAGGGAAGTA TTTGGGAGCT GTTGCAGACT AAAGGGTCCT GATGCGTTAA CTAAGTTCAT GATCGTTTTG CATAACGCGA TTGGTGGCCA AGAAACGGAT AAATTCCCAT TCCCGTTCTT TGACCGTGAA GGGAAATTCA TTCAGGCTCT CCTGACTTTG AACAAACGGG TCAGCGTCGA CGGCAAAATC ATTGGGGCTT TCTGTTTTTT GCAGATACCG AGTCCAGAGC TGCAGCAAGC TCTAGAAGTC CAGAGGAGGC AGGAGAGTGA ATACTTCTCA AGGAGGAAAG AGTTGGCTTA CATTTTCCAA GTTATAAAGA ATCCATTGAG CGGATTGCGT TTCACAAATT CATTGCTGGA AGCTACGGAT TTAAACGAGG ATCAGAAGCA GCTTCTTGAA ACAAGTGTTT CATGCGAGAA GCAGATCTCA AAGATTGTAG GAGACATGGA CGTCAAAAGC ATTGAAGACG GTTCATTTCT GCTAGAGAGA ACAGAGTTCT TCATTGGCAG TGTCATAAAT GCAGTGGTAA GCCAAGTCAT GTTTGTGGTG AGAGAGAGAA ATATTCAGCT GATCCGTAAC ATTCCCACGG AGATCAAATC CATGGCTGTT TACGGTGACC AGATAAGGCT CCAACAGGTT CTAGCAGAAT TTTTGCTAAG TATTGTCCGT TATGCGCCCA TGGAAGGCTC AGTAGAGCTC CATCTATGCC CGGTTCTGAA ACAAATGGCT GACGGGTTCT CCGCTATACG CTTGGAGTTC AGAATGGCGT GTGCAGGGGA AGGTGTGCCG CCAGAGAAAG TGCAGGACAT GTTCCATAGT AGCCGATGGA CAAGTCCAGA AGGATTAGGA CTAAGCGTTT GCAGAAAGAT TCTGAAGCTG ATGAACGGAA GGGTTCAGTA CATAAGGGAA TTCGAACGCT CTTATTTCCT AATCGTTATA GAACTCCCGG TTCCTCTGAT GATGATGATG CCATCATAGT GAGTGGCAGA AAATGTTTT |
| Length | 3539 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_7: 11429129.. 11433172 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT4G16250.1 |
| Description | phytochrome D |
| TAIR curator summary | Encodes a phytochrome photoreceptor with a function similar to that of phyB that absorbs the red/far-red part of the light spectrum and is involved in light responses. It cannot compensate for phyB loss in Arabidopsis but can substitute for tobacco phyB in vivo. |
| Alias | [PHYD][phytochrome D] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 4.58258 |
Ahg940598 | Nucleotide-sugar transporter family protein |
| 7.4162 |
Ahg491430 | tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1) |
| 14.5602 |
Ahg472418 | TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein |
| 19.2873 |
Ahg330043 | Chlorophyll A-B binding family protein |
| 21.2132 |
Ahg945603 | HVA22 homologue D |
| 21.9089 |
Ahg894396 | cryptochrome 3 |
| 22.0454 |
Ahg915831 | plasmodesmata-located protein 1 |
| 24.2487 |
Ahg490080 | plant UBX domain containing protein 4 |
| 24.5357 |
Ahg493949 | Raffinose synthase family protein |
| 26.8328 |
Ahg922129 | NAD(P)-binding Rossmann-fold superfamily protein |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|