Detail



ID : Ahg476807

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|476807|fgenesh2_kg.2__1937__AT1G76500.1
Sequence
GCCATGGACG GTGGTTACGA TCAAACCGGA GGAGCTTCTA GATACTTTCA CAACCTCTTC AGGCCTGAGC TTCAACACCA GCTTCAACCT CAGCCTCAAC TTCAGCCTTT GCCTCAGCCC CAGCAGCAGC AATCAGATGA TGAATCTGAC TCCAACAAGG ATCCGGGTTC CGACCCAGTT ACCTCGGGTT CAACTCCTGG AAAACGTCCA CGTGGACGTC CTCCGGGATC TAAGAACAAG CCGAAACCAC CGGTGATAGT TACAAGAGAT AGCCCCAACG TGCTTAGATC TCATGTTCTT GAAGTCTCAT CTGGAGCCGA CATAGTTGAG AGCGTTACCA CTTACGCTCG CCGGAGAGGG AGGGGTGTCT CCATACTCAG TGGTAACGGC ACGGTGGCTA ACGTCAGTCT CCGTCAGCCG GCAGCGGCTC ATGGGGCTAA TGGTGGAACC GGAGGTGTTG TGGCTTTACA TGGAAGGTTT GAGATACTTT CCCTCACCGG TACGGTGTTA CCTCCGCCTG CGCCGCCGGG ATCCGGTGGT CTTTCTATCT TTCTTTCCGG CGTTCAAGGT CAGGTGATCG GAGGAAACGT GGTGGCTCCG CTTGTGGCTT CGGGTCCAGT GATACTAATG GCTGCATCGT TCTCTAATGC AACTTTCGAA AGACTTCCGC TTGAAGATGA AGGAGGAGAA GGGGCAGGAG GAGAAGTTGG AGAAGTTGGA GAAGGAGGAG GAGGAGGAGG TGGTCCACCG CCGGCCACGT CATCATCACC ACCTTCTGGA GCCGGTCAAG GACAGCTAAG AGGTAACATG AGTGGCTATG ATCAGTTTTC CGGTGATCCT CATTTGCTTG GTTGGGGAGC CGCTGCCGCA 
Length870
Protein Sequence
Protein Residue
Map Locationscaffold_2: 16218304.. 16219178
Download Sequence
A.thaliana
AGI-codeAT1G76500.1
DescriptionPredicted AT-hook DNA-binding family protein
TAIR curator summaryEncodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light
Alias[AHL29][SOB3][AT-hook motif nuclear-localized protein 29][SUPPRESSOR OF PHYB-4#3]
Gene coexpression
MR
MR Locus Description
6.48074 Ahg336031 WRKY DNA-binding protein 65
10.3441 Ahg942130 Leucine-rich repeat (LRR) family protein
13.0384 Ahg322168 expansin B2
13.7477 Ahg484770 TAPETUM 1
19.0263 Ahg904884 RNA-binding protein
19.1311 Ahg332092 LJRHL1-like 3
20.7846 Ahg478121 Pectin lyase-like superfamily protein
20.9284 Ahg472269 laccase 8
23.6643 Ahg481945 LOB domain-containing protein 13
24.8193 Ahg486975 laccase 8
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression