Detail



ID : Ahg488445

Blast(Query) A.halleri   /   A.thaliana (RECIPROCAL DATA)     Link: ATTEDⅡ / TAIR        MR: MR LIST


Annotation
Descriptionjgi|Araly1|488445|fgenesh2_kg.6__1579__AT5G15948.1
Sequence
AATATCTCAA ACTCGTTTCC TCTCTCTTTT CATCATTACC AAATCATAAG CGGCTCTCTT AATATTTAGG GTTTCGAGTT TTCTCAATCA CCTGATTAAG CAGGTTTTCG TTCGTTTCAT ATCTTGGATC AATTACAAGA GAATTATAAA CTCCGGATCG TGATCAATAT TCCTTTACAT AAAAAGCGTG AATGAGATTA TGATGGAATC GAAAGGTGGC AATAAGAAGT CAAGCACAAG TTCCTTATTT TACGAAGCAC CCCTTGGTTA CAGCATTGAA GACGTTCGTC CTTACGGTGG AATCAAGAAA TTCAAATCTT CTGTCTACTC TAACTGCGCT AAGAGGCCTT CCTGAGTACC AGCCAATTTC TTCCATAGCT TTTCAATTAC AACAATCTCC TTTTCATTTC AAAGCTCTGG TTCCCGATGA CCATGTCTGC TATTGGCTTC GAAGGCTACG AGAAGCGTCT TGAAGTTACT TTCTTTGAGC CTGGTCTCTT TCTTGACACT CAAGGTAAAG GTCTACGTGC CTTGACCAAA TCTCAGATCG ATGAGATTCT TCAACCAGCT GAGTGCACTA TCGTTTCATC TCTCTCGAAC GATCAGCTCG ACTCTTATGT TCTCTCTGAG TCCAGTCTCT TTATCTTCCC TTACAAGATT GTCATCAAAA CTTGCGGGAC TACTAAGCTC CTCCTCTCTA TTGAGCCACT CTTGAGGTTA GCTAGTGAGC TTTCTCTTGA CGTCAAGGCT GTGAGGTACA CTCGTGGAAG CTTCCTCTGT CCTGGAGGAC AACCATTCCC TCACCGCAAC TTCTCTGAAG AAGTCTCTGT GCTTGATGGT CACTTTGCTA AGTTGGGTTT GAGCAGTGTT GCGTACTTGA TGGGCAATGA CGATGAAACC AAGAAATGGC ATGTTTACTC TGCTTCTTCT GATAACAACA ACAACAACAA CAATGTCTAC ACTCTCGAGA TGTGTATGAC TGGTCTGGAC AAAGACAAGG CATCTGTCTT CTTCAAGAAC GAGTCAAGCT CAGCTGGTTC TATGACTGAT AACTCTGGCA TCAGAAAGAT ACTTCCTCAA TCCCAAATCT GTGACTTTGA GTTTGAGCCA TGTGGCTACT CAATGAACAG CATCGAAGGT GACGCAATCT CCACCATCCA TGTGACTCCA GAAGATGGTT TCAGCTACGC TAGCTTTGAT GCAGTGGGAT ACGATTTCAC AACCATGGAC TTGAGCCATC TGGTCTCAAA GGTACTAACT TGCTTCGAGC CAAAGCAATT CTCTGTAGCT GTCCACTCTA GCGTCGCACA AAATGGGTAT CACTCTGGTC TATGTGTTGA CCTAGACGAT TACGAATGCA GAGAGACAAC AATGGAGTCT CTAGGAGAAG AGAGAGGAAC AGTGATGTAT CAGAGGTTTG AGAAGCTTGG AAAGTATTGT GGTTCTCCGC GATCTACCTT GAAATGTGAG TGGAGCAGCA ACAGTAGCTG CAACAGCGAG GACGAGAAGG AGGAATAGGG AATCTAAAGC TCAAGTTTTT AATTTTGTTT TCTCGAATAA TTAATGTGTT ATGGATATTT TTTCTTCTTT TTTCCCTTAA ACCAGTGATT GATTGTCTCT GTGGTCTATG TGAATTCGGA TGATC 
Length1645
Protein Sequence
Protein Residue
Map Locationscaffold_6: 6227057.. 6229162
Download Sequence
A.thaliana
AGI-codeAT5G15948.1
Descriptionconserved peptide upstream open reading frame 10
TAIR curator summaryUpstream open reading frames (uORFs) are small open reading frames found in the 5' UTR of a mature mRNA, and can potentially mediate translational regulation of the largest, or major, ORF (mORF). CPuORF10 represents a conserved upstream opening reading frame relative to major ORF AT5G15950.1
Alias[CPuORF10][conserved peptide upstream open reading frame 10]
Gene coexpression
MR
MR Locus Description
2.23607 Ahg470177 Homeodomain-like superfamily protein
4 Ahg476523 B-box type zinc finger protein with CCT domain
4.24264 Ahg931833 arginine decarboxylase 1
4.89898 Ahg495528 B-box type zinc finger family protein
6 Ahg935667 circadian clock associated 1
6.32456 Ahg494217 tonoplast dicarboxylate transporter
6.7082 Ahg477472 CONSTANS-like 2
8.12404 Ahg477481 conserved peptide upstream open reading frame 9
8.3666 Ahg485852
8.77496 Ahg341087
RNA-seq
Seasonal expression (July 2011 to June 2013)
The four seasons
Growth Chamber expression