| Annotation |
|---|
| Description | jgi|Araly1|935667|scaffold_403655.1 |
| Sequence |
AGCTTTTGAG GAGCTTAGTG ATGGAGACAA ATTCGTCTGG AGAAGATCTG GTTATTAAGA CTCGGAAGCC ATATACGATA ACGAAGCAAC GTGAAAGGTG GACTGAGGAA GAACATAATA GATTCATTGA AGCTTTGAGG CTTTATGGTA GAGCATGGCA AAAGATTGAA GAACATGTAG CAACGAAAAC TGCTGTTCAG ATAAGAAGTC ACGCTCAGAA ATTTTTCTCC AAGGTAGAGA AAGAGGCTGA AGCTAAAGGT GTAGCTATGG GTCAAGCGCT AGATATAGCT ATTCCTCCTC CACGGCCTAA GCGTAAACCA AGCAATCCTT ATCCTAGAAA GACGGGAAGT GGAAGTATCC CGATGTTAAC AGCGGGTGTG AATGATGGAC AAGAGTCCCT TGGATCAGAA AAAGTGTCCC ATCCTGAGAT GGCCAATGAA GATCGACAAC AATCAAAGCC TGAAGAGAAT AATAATCTGC AGGAAGAAAA CTGTTCAGAT TGTTTCACTC ATCAGTACCT CTCTGCTGCA TCCTCCATGA ATAAAAGTTC TATAGAGACA TCAAATGCAA GCACTTTCCG CGAGTTCTTG CCTTCACGGG AAGAGGGAAG TCAGAATAAC AGGATAAGAA AGGAGTCAAA CTCAGAGAAT TACTGTGATT TGAATGCAAA ATCTCTAGAA ACCGATAATG AGCAAGGACC TCAGACTTAT CCAATGCGTA TCCCTGTGCT AGTGCCATTG GGGAGCTCAA TAACAAGTTC TCTATCACAT CCTCCTTCAG AGCCAGACAG TCATCCCCAC ATTGTTGCAG GAGATTATCA GTCGTTTCCT AATCATATAA TGTCAACCCT TTTACAAACA CCGGCTCTCT ATACTGCCGC AACTTTCGCC TCATCATTTT GGCCTCCCGA TTCTAGTGGT AGCCCACCTG TTCAAGGGAA CTCACCTCCG AATCTGGCTG CTATGGCCGC TGCCACTGTT GCAGCTGCAA GTGCTTGGTG GGCTGCCAAT GGATTGTTAC CTTTATGTGC TCCTCTTAGT TCAGGTGGTT TCACTAGTCA TCCTCCATCT ACTTTTGGAC CATCCGGTGA TGTAGAGTAC ACAAAAACAA GCACTTTACA GCATGTTTCT GCGCAGAGCC GAGAGCAAGA ACACTCTGAG GCATCAAAGG CTCGATCTTC ATTGGACTCA GAGGAGATTG AAAATAAGAG TAAACCAGAT TGTCATGAGC AGCCTTCTGC AACATCTGAG AGTGATGCAA AGGGTTCAGA TGGAGCAGGA GACAGAAAAC AAGTTGACCG GTCTTCGTGT GGCTCAAACA CTCCCTCGAG TAGTGATGAT GTTGAGGCGG ATGCATCAGA GAGGCAAGAG GATGGCACCA ATGGTGAGGT GAAAGAAATG AATGAAGACA CTAATAATCC TCAAACTTCA GAGTCCAATG CACGCCGCAG TAGAATCAGC TCCAATATAA CCGATCCTTG GAAGTCTGTG TCTGACGAGG GTCGAATTGC CTTCCAAGCT CTCTTCTCCA GAGAGGTACT ACCGCAAAGC TTTACATATC GAGAAGAACA CAGAGAGGAG GAACAACAAC AACAACAAAG ATATCCAATG GCACTTGATC TTAACTTCAC AGCTCAGTTA ACTCCAGTTG ATGATCAAGA GGAGAGGAGA AACACAGGAT TTCTCGGAAT CGGATTGGAT GCTTCAAAGC TGATAAGTAG AGGAAGAACA GGTTTCAAAC CATATAAAAG ATGTTCCATG GAAGCCAAAG AAAGTAGAAT CCTCAACACC AATCCTATCA TTCATGTGGA ACAGAAAGAC CCCAAACGGA TGAGGTTGGA AAGTCAAGCT TCGACATGAA ACTCTATTTT CATCTCTTCT G |
| Length | 1881 |
| Protein Sequence | |
| Protein Residue | |
| Map Location | scaffold_4: 21602967.. 21605789 |
| Download Sequence |
|
| A.thaliana |
|---|
| AGI-code | AT2G46830.1 |
| Description | circadian clock associated 1 |
| TAIR curator summary | Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis. |
| Alias | [AtCCA1][CCA1][circadian clock associated 1] |
| Gene coexpression |
|---|
| MR |
| MR | Locus | Description |
| 1 |
Ahg494217 | tonoplast dicarboxylate transporter |
| 1.41421 |
Ahg476523 | B-box type zinc finger protein with CCT domain |
| 2.23607 |
Ahg485852 | |
| 2.44949 |
Ahg928955 | |
| 2.64575 |
Ahg470177 | Homeodomain-like superfamily protein |
| 2.82843 |
Ahg482070 | salt tolerance homologue |
| 4.24264 |
Ahg934945 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein |
| 4.24264 |
Ahg477472 | CONSTANS-like 2 |
| 4.89898 |
Ahg490840 | squalene epoxidase 3 |
| 6 |
Ahg488445 | conserved peptide upstream open reading frame 10 |
|
| RNA-seq |
|---|
Seasonal expression (July 2011 to June 2013) |
|
|
| The four seasons |
|
|
| Growth Chamber expression |
|
|